Per

The handling between jar and lib folders like git deps or local root are completely different. In my case, I have some config files in edn format (duct's duct_hierarchy.edn) exists in both jar deps and git deps. My additional conflict handler is never receiving the edn file that exists in git deps.

Is it the expected behaviour? I can imagine that even LICENSE or data_readers.clj would suffer the same issue. e.g. being overrided by files in git deps.